MmuEX6028685 @ mm10
Exon Skipping
Gene
ENSMUSG00000086277 | 4930558K02Rik
Description
RIKEN cDNA 4930558K02 gene [Source:MGI Symbol;Acc:MGI:1922618]
Coordinates
chr1:161949584-161957176:-
Coord C1 exon
chr1:161957093-161957176
Coord A exon
chr1:161952600-161952667
Coord C2 exon
chr1:161949584-161949642
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATCAGGCTTTCTTTCTCAGGTA
3' ss Score
7.01
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTAGAAAGAATGAGCATGAAAACCTGTCGCCCAGAAACAAGCAACTGTGCGCTACATGTCGAGGATATCAAAAAGTGAAAACG
Seq A exon
GTACAGCCAAAAACTTTCATAATACCTGACCATCAGAAACCACCCTCCCAGAATTCTGTGAATCACAG
Seq C2 exon
AGAGGTGAGCCTTCATTCGCAAGTGCAGCAGTTAAACTCCTACAATGATATTCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086277-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.848 C2=0.571
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(16.4=100)
A:
PF150811=DUF4548=FE(13.3=100)
C2:
PF150811=DUF4548=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAAAGAATGAGCATGAAAACCT
R:
CTGTTGGAATATCATTGTAGGAGTTT
Band lengths:
143-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types