HsaEX0014013 @ hg38
Exon Skipping
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]
Coordinates
chr5:138328484-138331218:-
Coord C1 exon
chr5:138330987-138331218
Coord A exon
chr5:138329553-138329647
Coord C2 exon
chr5:138328484-138328529
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTACTATTATGTCTCAACAGAGG
3' ss Score
7.74
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
CTAGGTTTTGTTTTTCTCCTGGTGAGAATTCGAAGACCATGTCTACGGAACTCTTCTCATCCACAAGAGAGGAAGGAAGCTCTGGCTCAGGACCCAGTTTTAGGTCTAATCAAAGGAAAATGTTAAACCTGCTCCTGGAGAGAGACACTTCCTTTACCGTCTGTCCAGATGTCCCTAGAACTCCAGTGGGCAAATTTCTTGGTGATTCTGCAAACCTAAGCATTTTGTCTGG
Seq A exon
AGGAACCCCAAAACGTTGCCTCGATCTTTCGAATCTTAGCAGTGGGGAGATAACTGCCACTCAGCTTACCACTTCTGCAGACCTTGATGAAACTG
Seq C2 exon
GTCACCTGGATTCTTCAGGACTTCAGGAAGTGCATTTAGCTGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402_MULTIEX2-2/9=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.506 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(6.2=12.1)
C2:
PF066178=M-inducer_phosp=FE(23.1=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTCAGGACCCAGTTTT
R:
AGTCCTGAAGAATCCAGGTGAC
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development