MmuEX6000922 @ mm10
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34748915-34750963:-
Coord C1 exon
chr18:34750738-34750963
Coord A exon
chr18:34749517-34749611
Coord C2 exon
chr18:34748915-34748960
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTATGTCTCAACAGAGG
3' ss Score
8.71
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
ATAGCCCCACCTCCCTCGGTGAAGACTCTGAAGTCATGTCTACAGGACCTATCCCACCTGCAAGTGAAGAGGGAAGTTTTGTTTCAGCACCCAGTTTTAGGTCCAAACAAAGGAAGATATTACACCTACTTTTGGAGAGAAACACTTCTTTTACCATCCGTTCAGATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGG
Seq A exon
AGGAACCCCAAAATGTTGCCTTGACCTTTCGAATCTTAGCAGTGGAGAGATGTCTGCCTCTCCGCTTACTACTTCTGCTGACCTTGAGGACAATG
Seq C2 exon
GTTCCTTGGATTCATCTGGACCTCTGGATAGACAGTTAACTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-'2-8,'2-7,3-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.515 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(7.4=36.4)
C2:
PF066178=M-inducer_phosp=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACCCAGTTTTAGGTCCA
R:
TCCAGAGGTCCAGATGAATCCA
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types