RnoEX0018926 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27546379-27549798:-
Coord C1 exon
chr18:27549573-27549798
Coord A exon
chr18:27548016-27548110
Coord C2 exon
chr18:27546379-27546424
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATATTCTTATGTCTCAACAGAGG
3' ss Score
8.88
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATAGCTCCACCTCGCTCGGTGAAGACGCTGAGGTCATGTCTACAGTACCTTTCCCAGCTGCAAGTGAAGAGGGGAGTTATGTCTCAGCACCCAGTTTTAGGTTCAAACAAAGGAAGATGTTACACCTACTTTTGGAGAGACACGCTTCTTTTACCGTTGGTTCAGATTTCCCCGAATCTCCGGGTGACAAACTCCATGACTCGGCAAACCTAAGCCTTCTGTCCGG
Seq A exon
AGGAACCCCAAAATGTTGCCTTGACCTTTCGAGTCTTAGCAATGGAGAGGTGTCTGCTTCTCACCTTTCTACTTCTGCTGACATTGAGGAAAACG
Seq C2 exon
GTTCCTTGGACTCCTCAGGACCTCAGGATATTCACTTAACTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=0.394 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=PU(7.5=39.4)
C2:
PF066178=M-inducer_phosp=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTTATGTCTCAGCACCC
R:
GGTCCTGAGGAGTCCAAGGAA
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]