HsaEX0015256 @ hg19
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin (chimaerin) 2 [Source:HGNC Symbol;Acc:1944]
Coordinates
chr7:29186185-29394279:+
Coord C1 exon
chr7:29186185-29186361
Coord A exon
chr7:29186465-29186576
Coord C2 exon
chr7:29394241-29394279
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAATTATTTCTGCACTCTAGGAC
3' ss Score
7.99
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
CTCCTCTAGGCTCACATGACCCAGACCCACAGGGCAAAAAGTGCGTCGTCGTGTCCCAACCTCCTGGTCCCAGAAACCTGGCCGCATCAAGTCAGCGCTTCCCATGCTGGAAGAAGCAAGCAGCCCCAGGGTGGAATCTTAAAAATTAATGAAGAGCATCGGCGGGGTGCCATTCAG
Seq A exon
GACTTACTTGCAAGCCCAGGATTTACATTTGGAAAGCGAGTGGTGTTTGATTCCCACTGTTTAAAAAGGCAACACACGTTCGCTGATGGTCTACATTCCAGCTGCACTAGCA
Seq C2 exon
ATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.586 A=0.009 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTAGGCTCACATGACCCA
R:
TCCATATAGGAGGCTGGTATTCT
Band lengths:
205-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)