HsaEX0015251 @ hg19
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin (chimaerin) 2 [Source:HGNC Symbol;Acc:1944]
Coordinates
chr7:29186465-29394279:+
Coord C1 exon
chr7:29186465-29186576
Coord A exon
chr7:29332541-29332579
Coord C2 exon
chr7:29394241-29394279
Length
39 bp
Sequences
Splice sites
3' ss Seq
CCACTCTTGCCTCTCTTCAGTCT
3' ss Score
8.07
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GACTTACTTGCAAGCCCAGGATTTACATTTGGAAAGCGAGTGGTGTTTGATTCCCACTGTTTAAAAAGGCAACACACGTTCGCTGATGGTCTACATTCCAGCTGCACTAGCA
Seq A exon
TCTATTCTGAACCCAGAAGCCCGAGAGAGCTTCCAAAAT
Seq C2 exon
ATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-'1-15,'1-10,10-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.009 A=0.429 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGCGAGTGGTGTTTGA
R:
TCCATATAGGAGGCTGGTATTCT
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)