HsaEX0015251 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29194412-29332981:+
Coord C1 exon
chr7:29194412-29194990
Coord A exon
chr7:29292925-29292963
Coord C2 exon
chr7:29332909-29332981
Length
39 bp
Sequences
Splice sites
3' ss Seq
CCACTCTTGCCTCTCTTCAGTCT
3' ss Score
8.07
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CCTCTGCCCGGTCTACTCGAAGTGCGGCGGGAGAGGCGGGAGCCCAGGAGAGGGTGCGGGAGCTGGCGGGGCGGCTCGGAGCTGCCAGGACGCCCTGGTCCCAGCCGCGCACAGGGGAGCGTGGACGGCAGAGGGGCTCGGCGGGAGCCGAGATCCGCCCGTCCCGGCTGCCCCTCGGCCTCCCTCTGCTCCCACCTACCCCCTGACACCCATAGAAAAGCGTGCAAAGGCGCGGAGCGGGACGGAAACCACAAATAAATAGCGGCGGCGGCAGCGCGTCATCTGGTGGAGCAGGAAGTGCAGGCAGAGTCCGGAGGCTGGTGCTTTCTGCGCGTCCCCAGGACTTTGCCATGGGCTGGGGGCCGCGGAGGCTGCGAGCGGCCGGGCGAGGGCAGCGGCGGCGGCGTCCGCACCGGGGCTGAGCGAGCAGCGACGCGAGGGGCGCGCGGAGATGGCAGCGTCCAGCAACTCCAGCCTGTCCGGCTCGTCGGTGTCCTCCG
Seq A exon
TCTATTCTGAACCCAGAAGCCCGAGAGAGCTTCCAAAAT
Seq C2 exon
AGACGACGGCTCGATCTTGGCTTGGGATCCTGTCTAGGAAGATGTCCTCTCTGCACAGGGAGTCAGAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-'15-41,'15-34,24-41=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.547 A=0.833 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAACTCCAGCCTGTC
R:
TCCTTTCTGACTCCCTGTGCA
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development