HsaEX1008747 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29293570-29354663:+
Coord C1 exon
chr7:29293570-29293608
Coord A exon
chr7:29323221-29323388
Coord C2 exon
chr7:29354625-29354663
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCTCTTTCTCTGCAGCCT
3' ss Score
10.72
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
CTCCAGACACACAGGCCTCCTTGCAGTTCCCGCAAACAG
Seq A exon
CCTTGGACTTCGCAGAGCACATCAACATCTGACCTTTCAGATGTTTGAAGATGGATACCCTGCTCACTCAGAGACATTGCTCACTCAACTTTCTTCAGTTGTGTCTTACATGATGAGGTTTTGAATCCTCTCCTCCAGACGTATTCCAATCCCAGAACTACACTCCAG
Seq C2 exon
ATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069_MULTIEX1-7/28=6-9
Average complexity
C3
Mappability confidence:
75%=88=90%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000222792fB12385
Main Skipping Isoform:
ENST00000409350fB12376
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains