HsaEX1008735 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29292925-29297388:+
Coord C1 exon
chr7:29292925-29292963
Coord A exon
chr7:29293570-29293608
Coord C2 exon
chr7:29297288-29297388
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTCCCTCACTCAGCTC
3' ss Score
8.24
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TCTATTCTGAACCCAGAAGCCCGAGAGAGCTTCCAAAAT
Seq A exon
CTCCAGACACACAGGCCTCCTTGCAGTTCCCGCAAACAG
Seq C2 exon
TGTTCTGGGGACCCCTTTACACCTGGCTGTCTCATTCTCCGCTCTGAAGAAGTCCATCTGACTGCAGTTAGAAAGGATAAGGATGAAGACCCATCTTAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-'24-36,'24-35,25-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.857 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000409350fB12376
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGAGAGAGCTTCCAAAAT
R:
GGCTAAGATGGGTCTTCATCCT
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains