HsaEX1008745 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29193986-29354663:+
Coord C1 exon
chr7:29193986-29194168
Coord A exon
chr7:29194832-29194990
Coord C2 exon
chr7:29354625-29354663
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTGCGCGTCCCCAGGAC
3' ss Score
10.54
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCAGGGACCGTCAGCTCCAGAGCAACAAAGGACAATTTGGAGAGGAGTGGAAGGAGCGCTCCATAGTGGCTCTGTCATCCCAGGTTCCCTTCTGCCTAGCACCGTGGCCCTAGTGATCCCGCCTTCGCCCTCTGGATCCCCCACCCCCACTGTCTCGCTGCTCGAGAGCCCGGCGGGGCGCG
Seq A exon
GACTTTGCCATGGGCTGGGGGCCGCGGAGGCTGCGAGCGGCCGGGCGAGGGCAGCGGCGGCGGCGTCCGCACCGGGGCTGAGCGAGCAGCGACGCGAGGGGCGCGCGGAGATGGCAGCGTCCAGCAACTCCAGCCTGTCCGGCTCGTCGGTGTCCTCCG
Seq C2 exon
ATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069_MULTIEX1-3/28=2-9
Average complexity
C2*
Mappability confidence:
90%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=0.620 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000439384fB12382
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGACCGTCAGCTCCA
R:
TCCATATAGGAGGCTGGTATTCT
Band lengths:
211-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains