HsaEX6007592 @ hg38
Exon Skipping
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr7:29181290-29195451:-
Coord C1 exon
chr7:29195077-29195451
Coord A exon
chr7:29184421-29184548
Coord C2 exon
chr7:29181290-29181412
Length
128 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTTTCCTGCCTTCAGATC
3' ss Score
10.12
5' ss Seq
TCAGTGAGC
5' ss Score
4.04
Exon sequences
Seq C1 exon
AAACAAAGAAAATCAAGTCTGCGAGGAGCGAGGGTTTGCTCCCCTCTGCTCCGGATTTGGGTGTCCAGGGTAGCGGGCGCGGCACGGCAAACAGGTCGGGGCGCTCTGCTTCACCCCAACCTTCTCCGCCCCGCCAGCCCCCGCTCCAGCTGCGCCAGAAAGTGCGAGCCTGCCCGCTCCTTTCGCTTTTCGCTCGCTGCACTCCAAGCCCCGGAACACCCGCGTCCGCACACTAAGGGCACCACCGCTCTCCCACCTCTGCGCTGTCAGATGTCAGGCGCGGAGGTGCTCTGGGCACCGAGGTGCTGGCGAACCAAACAAGTATCACCCCGGACGCCTGCCCCCATTCCGAGAGAGCGGGCGGGATGGCCACAG
Seq A exon
ATCCAAACGGAAACATTGGCTCTTCCTGGGGTTCCAGCCTGCTGTCTTGACAGGAACTATACCATCAGCTCTCCTGGGTCTCTTACATGCCAAGTCATCCTGCAGATCTGGGACTCACTCCGTAATCA
Seq C2 exon
GCTTGATTGCTGTAAGTTGAACACGTCAGTGGCATGGGCACCAGCTGCACAACCCTAGGAGCCACCAAACACAGTATATTCTATATAAATGTTGCTGCCAGGAGCCCCAGTTCAAACTACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTGCGCTGTCAGATG
R:
TGTAGTTTGAACTGGGGCTCC
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains