HsaEX6007592 @ hg19
Exon Skipping
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:14399]
Coordinates
chr7:29220906-29225213:-
Coord C1 exon
chr7:29225129-29225213
Coord A exon
chr7:29224037-29224164
Coord C2 exon
chr7:29220906-29221028
Length
128 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTTTCCTGCCTTCAGATC
3' ss Score
10.12
5' ss Seq
TCAGTGAGC
5' ss Score
4.04
Exon sequences
Seq C1 exon
GTGATTTTGATATGCTGCTAAGGTTTGATAAGAGAAATGAGATTCAGAGAACAGATTATATTGTTGAAGAGCTTGACTGGAAATG
Seq A exon
ATCCAAACGGAAACATTGGCTCTTCCTGGGGTTCCAGCCTGCTGTCTTGACAGGAACTATACCATCAGCTCTCCTGGGTCTCTTACATGCCAAGTCATCCTGCAGATCTGGGACTCACTCCGTAATCA
Seq C2 exon
GCTTGATTGCTGTAAGTTGAACACGTCAGTGGCATGGGCACCAGCTGCACAACCCTAGGAGCCACCAAACACAGTATATTCTATATAAATGTTGCTGCCAGGAGCCCCAGTTCAAACTACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-'3-6,'3-4,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTTTGATATGCTGCTAAGGT
R:
TGTAGTTTGAACTGGGGCTCC
Band lengths:
206-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)