HsaEX6007591 @ hg19
Exon Skipping
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:14399]
Coordinates
chr7:29224037-29226163:-
Coord C1 exon
chr7:29226063-29226163
Coord A exon
chr7:29225129-29225213
Coord C2 exon
chr7:29224037-29224164
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTAATTCCCAGGTG
3' ss Score
11.1
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCTGCAATACAGTGACACGATCACAGCTCACTGCTACAGCCTCTACCTCCTGGGCTTAATCCATCCTCCCTCCTCAGCCTCCCAAGCAGCTGGGACTACAG
Seq A exon
GTGATTTTGATATGCTGCTAAGGTTTGATAAGAGAAATGAGATTCAGAGAACAGATTATATTGTTGAAGAGCTTGACTGGAAATG
Seq C2 exon
ATCCAAACGGAAACATTGGCTCTTCCTGGGGTTCCAGCCTGCTGTCTTGACAGGAACTATACCATCAGCTCTCCTGGGTCTCTTACATGCCAAGTCATCCTGCAGATCTGGGACTCACTCCGTAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-'2-4,'2-3,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTACCTCCTGGGCTTAA
R:
CTGCAGGATGACTTGGCATGT
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)