HsaEX0017102 @ hg19
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:26977]
Coordinates
chr10:125530432-125557642:-
Coord C1 exon
chr10:125557492-125557642
Coord A exon
chr10:125539683-125539771
Coord C2 exon
chr10:125530432-125530555
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATCATGTTTCTGTCCCTAGATC
3' ss Score
10.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATTTGAGGGAAACAGTGAGAAGGAGATCCCTGTTCTCAATGAGCTACCCGTCCCCATGGTGGCCCGCTACATCCGCATAAACCCTCAGTCCTGGTTTGATAATGGGAGCATCTGCATGAGAATGGAGATCCTGGGCTGCCCACTGCCAG
Seq A exon
ATCCTAATAATTATTATCACCGCCGGAACGAGATGACCACCACTGATGACCTGGATTTTAAGCACCACAATTATAAGGAAATGCGCCAG
Seq C2 exon
TTGATGAAAGTTGTGAATGAAATGTGTCCCAATATCACCAGAATTTACAACATTGGAAAAAGCCACCAGGGCCTGAAGCTGTATGCTGTGGAGATCTCAGATCACCCTGGGGAGCATGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.032
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACATCCGCATAAACCCT
R:
ATACAGCTTCAGGCCCTGGT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)