MmuEX6014706 @ mm9
Exon Skipping
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:139253750-139270606:-
Coord C1 exon
chr7:139270456-139270606
Coord A exon
chr7:139262500-139262588
Coord C2 exon
chr7:139253750-139253873
Length
89 bp
Sequences
Splice sites
3' ss Seq
AACCATCTTTCTCTCCCTAGATC
3' ss Score
11.99
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATTTGAAGGAAACAGTGAGAAGGAGATTCCTGTGCTCAATGAGCTGCCAGTCCCCATGGTGGCCCGCTACATTCGCATAAACCCTCAGTCCTGGTTTGATAACGGGAGCATCTGCATGAGGATGGAGATCTTGGGCTGCCCACTGCCGG
Seq A exon
ATCCTAATAACTATTATCACCGACGTAATGAGATGACCACCACGGATGACCTGGATTTTAAGCACCACAACTATAAGGAAATGCGCCAG
Seq C2 exon
TTGATGAAGGTTGTCAATGAAATGTGCCCCAATATTACCAGGATTTACAACATTGGCAAAAGCCACCAGGGCCTGAAATTGTATGCGGTAGAGATCTCTGACCATCCTGGGGAACATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCGCTACATTCGCATAAA
R:
CCGCATACAATTTCAGGCCCT
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: