RnoEX6005253 @ rn6
Exon Skipping
Gene
ENSRNOG00000015902 | Cpxm2
Description
carboxypeptidase X (M14 family), member 2 [Source:RGD Symbol;Acc:1310955]
Coordinates
chr1:204067058-204085819:-
Coord C1 exon
chr1:204085669-204085819
Coord A exon
chr1:204078113-204078201
Coord C2 exon
chr1:204067058-204067181
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATCATTTTTCTGTCCCTAGATC
3' ss Score
10.9
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATTTGAAGGAAACAATGAGAAGGAGACCCCTGTGCTCAATGAGCTGCCAGTCCCCATGGTGGCCCGCTACATTCGCATAAACCCTCAGTCCTGGTTTGATAATGGGAGCATCTGTATGAGGATGGAGATCTTGGGCTGCCCACTGCCAG
Seq A exon
ATCCTAATAACTATTATCACCGACGTAATGAGATGACCACCACTGATGACCTGGATTTTAAGCACCACAACTATAAGGAAATGCGCCAG
Seq C2 exon
TTGATGAAGGTTGTGAATGAGATGTGCCCCAATATTACCAGGATTTACAACATTGGCAAAAGTCACCAGGGCCTGAAGTTGTATGCAGTAGAGATTTCTGACCATCCTGGGGAACACGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015902-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(79.6=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCGCTACATTCGCATAAA
R:
TACAACTTCAGGCCCTGGTGA
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]