MmuEX6014706 @ mm10
Exon Skipping
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:132062067-132078923:-
Coord C1 exon
chr7:132078773-132078923
Coord A exon
chr7:132070817-132070905
Coord C2 exon
chr7:132062067-132062190
Length
89 bp
Sequences
Splice sites
3' ss Seq
AACCATCTTTCTCTCCCTAGATC
3' ss Score
11.99
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATTTGAAGGAAACAGTGAGAAGGAGATTCCTGTGCTCAATGAGCTGCCAGTCCCCATGGTGGCCCGCTACATTCGCATAAACCCTCAGTCCTGGTTTGATAACGGGAGCATCTGCATGAGGATGGAGATCTTGGGCTGCCCACTGCCGG
Seq A exon
ATCCTAATAACTATTATCACCGACGTAATGAGATGACCACCACGGATGACCTGGATTTTAAGCACCACAACTATAAGGAAATGCGCCAG
Seq C2 exon
TTGATGAAGGTTGTCAATGAAATGTGCCCCAATATTACCAGGATTTACAACATTGGCAAAAGCCACCAGGGCCTGAAATTGTATGCGGTAGAGATCTCTGACCATCCTGGGGAACATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-'17-12,'17-11,20-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
ENSMUST00000033149fB8192
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCGCTACATTCGCATAAA
R:
CCGCATACAATTTCAGGCCCT
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types