HsaEX0017162 @ hg19
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:17888]
Coordinates
chr7:65554263-65557073:+
Coord C1 exon
chr7:65554263-65554322
Coord A exon
chr7:65554599-65554682
Coord C2 exon
chr7:65556993-65557073
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTGCCATGTGCCTCCCAGGAG
3' ss Score
6.98
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
TGTGCCGGGCTCCTGATGACCCTCAAGGGACTTCCCAGCACCTACAACAAAGACTTACAG
Seq A exon
GAGGACAAGGAAGCTGTGTTTGAAGTGTCAGACACTATGAGTGCCGTGCTCCAGGTGGCCACTGGCGTCATCTCTACGCTGCAG
Seq C2 exon
ATTCACCAAGAGAACATGGGACAGGCTCTCAGCCCCGACATGCTGGCCACTGACCTTGCCTATTACCTGGTCCGCAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCCTGATGACCCTCAAG
R:
CCCTTTGCGGACCAGGTAATA
Band lengths:
135-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)