RnoEX0012261 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30176811-30177776:+
Coord C1 exon
chr12:30176811-30176870
Coord A exon
chr12:30177107-30177190
Coord C2 exon
chr12:30177696-30177776
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATCTGCCACACCTCTCTCAGGAA
3' ss Score
6.87
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
TGCGCAGGACTCCTGATGACCCTCAAGGGACTTCCAAGCACCTACAACAAGGACTTACAG
Seq A exon
GAAGACAAGGAGGCTGTGTTTGAAGTGTCTGACACCATGACAGCTGTCCTCCAAGTAGCCACTGGAGTCATCTCTACACTGCAG
Seq C2 exon
ATTCATCGTGAGAACATGGCACAGGCACTCAGCCCTGACATGCTGGCTACCGACCTTGCCTACTACCTGGTCCGCAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'14-17,'14-15,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146981=ASL_C2=PU(20.0=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCCTGATGACCCTCAA
R:
CCCTTTGCGGACCAGGTAGTA
Band lengths:
136-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]