MmuEX0006433 @ mm10
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130012050-130013056:-
Coord C1 exon
chr5:130012997-130013056
Coord A exon
chr5:130012657-130012740
Coord C2 exon
chr5:130012050-130012130
Length
84 bp
Sequences
Splice sites
3' ss Seq
AACTGCCACACCCCTCCCAGGAA
3' ss Score
5.59
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
TGTGCCGGACTCCTGATGACCCTCAAGGGACTTCCAAGCACCTACAACAAGGACTTACAG
Seq A exon
GAAGACAAGGAGGCTGTGTTTGAAGTGTCTGACACCATGATAGCTGTCCTCCAAGTGGCCACTGGAGTCATCTCTACATTGCAG
Seq C2 exon
ATTCATCGTGAGAACATGAAACAGGCGCTCAGCCCTGACATGCTGGCCACGGACCTCGCCTACTACCTGGTCCGCAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146981=ASL_C2=PU(20.0=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACTCCTGATGACCCTCAA
R:
CCCTTTGCGGACCAGGTAGTA
Band lengths:
136-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types