DreEX6085293 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31234584-31235116:+
Coord C1 exon
chr21:31234584-31234643
Coord A exon
chr21:31234729-31234812
Coord C2 exon
chr21:31235036-31235116
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCGAGATTTCATTACTGCAGGAG
3' ss Score
4.32
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGTGCAGGCTTTCTGATGACACTCAAAGGCTTACCAAGCACGTACAACAAGGACTTACAG
Seq A exon
GAGGATAAAGAAGCCATGTTTGATACATATGATACTGTACACGCTGTGCTGCAGGTGGCGACAGGCGTCATCTCAACTCTAAAG
Seq C2 exon
GTCAATCAAGTAAAGATGGAAGAAGCCCTCAGTCCAGATATGCTGGCCACTGATCTCGCCTATCATCTGGTCAGAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146981=ASL_C2=PU(20.0=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGGCTTTCTGATGACA
R:
TCTGACCAGATGATAGGCGAGA
Band lengths:
135-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]