GgaEX1017734 @ galGal4
Exon Skipping
Gene
ENSGALG00000002576 | CRYD2
Description
argininosuccinate lyase [Source:RefSeq peptide;Acc:NP_001025885]
Coordinates
chr19:4933479-4934239:-
Coord C1 exon
chr19:4934180-4934239
Coord A exon
chr19:4933821-4933904
Coord C2 exon
chr19:4933479-4933559
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCATCCATGCTCTCACGCAGGAG
3' ss Score
6.14
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTGGCTGCTGTTCTCATGGTTCTGAAAGGACTTCCAAGCACCTACAACAAGGATCTGCAG
Seq A exon
GAGGACAAGGAAGCTGTCTTTGATGTTGTGGACACTCTGACTGCTGTGCTCCAGGTTGCCACGGGAGTGATTTCTACCCTCCAG
Seq C2 exon
GTCAACAAGGAGAACATGGAGAAGGCTCTGACCCCTGAGTTGCTGTCTACTGATCTGGCTCTCTACTTGGTTCGTAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002576_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146981=ASL_C2=PU(20.0=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTGCTGTTCTCATGGTT
R:
ACGAACCAAGTAGAGAGCCAGA
Band lengths:
135-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]