HsaEX0017606 @ hg19
Exon Skipping
Gene
ENSG00000178662 | CSRNP3
Description
cysteine-serine-rich nuclear protein 3 [Source:HGNC Symbol;Acc:30729]
Coordinates
chr2:166326157-166374471:+
Coord C1 exon
chr2:166326157-166326250
Coord A exon
chr2:166351269-166351438
Coord C2 exon
chr2:166374383-166374471
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTGTTCCTGTTACAGGTA
3' ss Score
11.59
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTGGTTGGCTGCCGCCTGATGGATAGACGAGGGAGGAGTGTACTCTCTTCAGTGTGTTCTGACGGAGCCGAAGTACAGAAACCATATTTACAG
Seq A exon
GTACATGTGACAGCGTTGCAGCTATGAGTGGAATTTTAAAGGGGAAGTTTGAAGAAGTCAACGGCTCCTCACCCTGCTCTTCAGTGCAGGAATCAGATGATGAAGTTTTCAGCTGTGACAGTACTGAGAGTGTTGATAGTGTCAATCGTTCAGTTTTAATGATTTTACCA
Seq C2 exon
GAAAAAATGAGGAAATATCAACAGACTGAAAATATGTTTTCAGAGGCATAGAATCTTCAGGAAAATACTGGAGTTCCTGAGATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178662-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGATGGATAGACGAGGG
R:
CTTGAGATCTCAGGAACTCCAGT
Band lengths:
170-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)