MmuEX0012976 @ mm10
Exon Skipping
Gene
ENSMUSG00000044647 | Csrnp3
Description
cysteine-serine-rich nuclear protein 3 [Source:MGI Symbol;Acc:MGI:1925021]
Coordinates
chr2:65845767-65878052:+
Coord C1 exon
chr2:65845767-65845884
Coord A exon
chr2:65860531-65860692
Coord C2 exon
chr2:65877965-65878052
Length
162 bp
Sequences
Splice sites
3' ss Seq
GGCTCCCGTTCCTTCTGCAGGTC
3' ss Score
11.4
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGAGGACGCCAGGATCTGGCTTTTGTTATTGGTTGGCTGCGGCCTGATGGATGAAGGGCGGAGTGAGCTCTTCTCAGTGTGTTCTGCTGGAGCCCAAGTACAGAGACCATATTTACAG
Seq A exon
GTCCATGTGACAGCTATGAGTGGAATTTTAAAGGGGACGTTGGAAGAAGCTGGCAGCGCTTCACCCTGCTCTTCTGTGCAGGAATCAGATGATGACGTTTTTAGCTGTCACAGTGCTGAGAGTCTTGATAGTGTCAGTGTGTCCACACCTGATCCTTTACCC
Seq C2 exon
GAAAAAATAAGAGGATATCAAGAGGCTGAAAGAATATTTTCAGAAGCATAGACTCTTCGGAGGATACTGCAGTTCATGAGATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044647_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.857
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACGCCAGGATCTG
R:
CTTGAGATCTCATGAACTGCAGT
Band lengths:
206-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types