HsaEX0017606 @ hg38
Exon Skipping
Gene
ENSG00000178662 | CSRNP3
Description
cysteine and serine rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
Coordinates
chr2:165469647-165517961:+
Coord C1 exon
chr2:165469647-165469740
Coord A exon
chr2:165494759-165494928
Coord C2 exon
chr2:165517873-165517961
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTGTTCCTGTTACAGGTA
3' ss Score
11.59
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTGGTTGGCTGCCGCCTGATGGATAGACGAGGGAGGAGTGTACTCTCTTCAGTGTGTTCTGACGGAGCCGAAGTACAGAAACCATATTTACAG
Seq A exon
GTACATGTGACAGCGTTGCAGCTATGAGTGGAATTTTAAAGGGGAAGTTTGAAGAAGTCAACGGCTCCTCACCCTGCTCTTCAGTGCAGGAATCAGATGATGAAGTTTTCAGCTGTGACAGTACTGAGAGTGTTGATAGTGTCAATCGTTCAGTTTTAATGATTTTACCA
Seq C2 exon
GAAAAAATGAGGAAATATCAACAGACTGAAAATATGTTTTCAGAGGCATAGAATCTTCAGGAAAATACTGGAGTTCCTGAGATCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178662_MULTIEX1-2/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGATGGATAGACGAGGG
R:
CTTGAGATCTCAGGAACTCCAGT
Band lengths:
170-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development