RnoEX0024995 @ rn6
Exon Skipping
Gene
ENSRNOG00000005359 | Csrnp3
Description
cysteine and serine rich nuclear protein 3 [Source:RGD Symbol;Acc:1306214]
Coordinates
chr3:51883559-51918875:+
Coord C1 exon
chr3:51883559-51883633
Coord A exon
chr3:51897030-51897191
Coord C2 exon
chr3:51918788-51918875
Length
162 bp
Sequences
Splice sites
3' ss Seq
GGCTCCCGTTCCTTCTGCAGGTC
3' ss Score
11.4
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGATGGTCGAGGGCGGAGTGAGCTCTTCTCAGTGTGTTCTGCCGGAGCCCAAGTACAGAGACCATATTTACAG
Seq A exon
GTCCAAGTGACAGCTATGAGTGGAATTTTAAAGGGGAAGCTGGAAGAAGCTGACAGCGCCTCTCTCTGCTCTTCGGGGCAGGAATCAGATGATGACGTTTTTAGCTGTTACAGTGCTGACAGTCTTGATAGTGTCTGTCTGTCCACAGCTGGTCATTTACCC
Seq C2 exon
GAAAAAATAAAAGGATATCAGCAGCCTGAAAGGATATTCTCAGAAGCATAGACTCTTCGGAGGATACTGAACTTCATGAGATCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005359_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATGGTCGAGGGCGG
R:
CGTGAGATCTCATGAAGTTCAGT
Band lengths:
163-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]