HsaEX0022712 @ hg19
Exon Skipping
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:19876]
Coordinates
chr10:32562091-32573978:-
Coord C1 exon
chr10:32573626-32573978
Coord A exon
chr10:32562850-32562966
Coord C2 exon
chr10:32562091-32562209
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTGTTTTTTTTAGAAC
3' ss Score
10.98
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCTTACTGGACAGAGCTCATTCAGACTATGACAGTGTGTTTCACCATCTGGATTTGGAAATGCTTTCCTCACCACAACATTCTCCAGTCAATCAGTTTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCTAAAGACCTCAGTCAGATACTAGTCAATATCAAATCATGTAGATGGCGGCATTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGATGAACTCTCCTGTAGAAAATTATATAGGAGTATAAACCGAACAGGAACAGCACAACCTGGGACCCAGACATGCAGTACCTCTACGCAAAGTAAAAGTAGCAGTGGTTCAGCACACTTTG
Seq A exon
AACTGAGCTCTCCATAGACAAACATAAGTAGCATAACACAGTGTCTTTCCTCAGACATCATTCTGTACAGTAAATCAACATAAACAACTCCGTTCTTATTGACTGGATTTTTTCCAG
Seq C2 exon
CATTTACAGCCGAACAATACCAGCAACATCAACAGCAACTGGCACTCATGCAGAAACAGCAGCTTGCACAAATTCAGCAACAGCAAGCAAATAGTAATTCCTCCACCAACACATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=1.000 C2=0.592
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
NO
C2:
PF067527=E_Pc_C=PU(15.3=97.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTTAGGCCTCGGACACC
R:
TGCTGAATTTGTGCAAGCTGC
Band lengths:
243-360
Functional annotations
There are 2 annotated functions for this event
PMID: 31911676
This event
CRISPR targeting of the poised exons showed a modest fitness advantage in cell culture. Tumors derived from engraftment of polyclonal EPC1 poison exon targeted PC9-Cas9 cells were significantly larger and exhibited increased Ki-67 staining relative to control tumors.
PMID: 31911676
This event
[CRISPR screen]. Conserved poison exon with pro-oncogenic impact when depleted: HeLa No Change at 14 days (FC=1.187, FDR=0.002), PC9 No Change at 14 days (FC=1.144, FDR=0.102), Late Xenograft Enriched (FC=2.344, FDR=0.000).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)