HsaEX0026563 @ hg19
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004]
Coordinates
chr1:78411191-78414985:-
Coord C1 exon
chr1:78414840-78414985
Coord A exon
chr1:78412215-78412261
Coord C2 exon
chr1:78411191-78411327
Length
47 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTATACTTCACAGTGC
3' ss Score
5.69
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCAGGCAGTTCCTGCTCCGACTGGGGCTCCTCCAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTATTATAGACAACAAGCAGCCTATTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
Seq A exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCACCAG
Seq C2 exon
TGCTGAAGATGCTGCAAGCACCAAATCATAGCTCATAAAATCAGGTCCTGAGATAGTTACCCATAAAGAGGAATCCTTTGAGTGTATGCCATTGGTGAGCCGATGAGCATGGACCATAGAAGGGCTCAATGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCCTCCAGCACCTCAG
R:
AGCCCTTCTATGGTCCATGCT
Band lengths:
146-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)