GgaEX0013092 @ galGal3
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19612948-19614989:+
Coord C1 exon
chr8:19612948-19613048
Coord A exon
chr8:19613922-19613969
Coord C2 exon
chr8:19614850-19614989
Length
48 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTATACTTCACAGTGC
3' ss Score
5.69
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAGTGCAGGTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTTCCTTCAAGGAGCATTGCACT
Seq A exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAAGCAACAG
Seq C2 exon
TGCTGAAGATGCTGCAAGCACCAAATCATAGCTCATAGAATCAGGTCCTGAGATAGTTACTACCAGTAAAGAGGAATCCTTTGAGTGTATGCCATTGGTGAGCCGATGAGCATGGACCATAGAAGGGCTCCATGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'32-31,'32-30,33-31
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAAGGAGCATTGCACT
R:
CTATGGTCCATGCTCATCGGC
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]