MmuEX1010740 @ mm10
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152233602-152235768:+
Coord C1 exon
chr3:152233602-152233702
Coord A exon
chr3:152234524-152234570
Coord C2 exon
chr3:152235468-152235768
Length
47 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTATACTTCACAGTGC
3' ss Score
5.69
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGCAGGTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
Seq A exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCAACAG
Seq C2 exon
TGCTGAAGATGCTGCAAGCACCAAATCATAGCTCATAAAATCAGGTCCTGAGATAGTTACCCATAAAGAGGAATCCTTTGAGTGTATGCCATTGGTGAGCCGATGAGCATGGACCATAGAAGGGCTCAATGTAGAAGGTAAAATTGGCAAATCATAATTGAGAAATATGACTGTGTTCCCATACATAATATGGTATAGGGTGTAATGTACCTGCTCTTGATCACTTTCATTTTAAAGTGCTATTCACTTAAATGTTCCATGAATTGTTTATTGCACCACAGTTTGTGTGTGTGTGTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'52-52,'52-51,53-52
Average complexity
C2
Mappability confidence:
100%=100=50%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.380 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAAGGAGCATTGCACT
R:
AGCCCTTCTATGGTCCATGCT
Band lengths:
147-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types