HsaEX0032601 @ hg19
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33656433-33657975:+
Coord C1 exon
chr6:33656433-33656558
Coord A exon
chr6:33657015-33657187
Coord C2 exon
chr6:33657811-33657975
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCCCCTGGCCCCCAGGCG
3' ss Score
9.3
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCATGCCGCTGATCTACTGGTTCTCCCGCCGCATGACCCTGTGGGGCAGCATCTCCTTCAACCTGGCCGTGTTTATCAACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGCGTCCACAG
Seq A exon
GCGTGCTGGACTCCCCTCTCATCTCATTGCTCTTCTGGATCCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCTACAGCATCCGCCCCCTCATCGTGGCGCTCATCCTGCGCTCCATCTACTATCTGGGCATCGGGCCCACACTCAACATCCTGGGTGCCCTCAAT
Seq C2 exon
CTGACCAACAAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGTGGCACCTTCATCCGGGGCTATAAGGCCATGGTCATGGACATGGAATTCCTCTACCACGTGGGCTACATCCTGACCAGTGTCCTGGGCCTCTTTGCTCATGAGCTGTTCTACAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.4=1.7)
C2:
PF0052026=Ion_trans=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGCTGATCTACTGGTTCT
R:
CACTGGTCAGGATGTAGCCCA
Band lengths:
247-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)