GgaEX6027041 @ galGal3
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4445205-4446278:-
Coord C1 exon
chr26:4446153-4446278
Coord A exon
chr26:4445486-4445658
Coord C2 exon
chr26:4445205-4445369
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGTGGGTCATCTCTTCCCAGGAG
3' ss Score
7.72
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCATGCCGCTGATGTACTGGTTCTCCCGCAGAATGACTCTCTGGGGAAGCATTTCCTTCAACCTGGCTGTCTTCATCAACATAATCATTGCTTTCTTCTACCCTTATGTTGAGGCCACTTCCATGG
Seq A exon
GAGTGCTGGATTCCCCATTGATCTCACTGCTCTTCTGGATTCTGATCTGCTTCTCCATCATGGCCCTGTTCACCAAGCGGTACGGTGTCAGACCACTGCTGGTGGCCCTGATCTTGAGATCAATTTATTACTTGGGGATTGGACTCACACTGAACATCCTGGGAGCTCTCAAT
Seq C2 exon
CTGACCAACAAGATTGTGTTTGTGGTGAGCTTTGTGGGTAACCGTGGGACCTTCATCCGAGGCTACAAGGCCATGATCATGGACGTGGAGTTTCTTTACCACGTTGGCTACATCCTGACGAGCGTCCTGGGGCTCTTTGTGCATGAACTCTTCTACAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.4=1.7)
C2:
PF0052026=Ion_trans=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCGCTGATGTACTGGTT
R:
GTCAGGATGTAGCCAACGTGG
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]