RnoEX6061797 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5705973-5707175:+
Coord C1 exon
chr20:5705973-5706098
Coord A exon
chr20:5706425-5706597
Coord C2 exon
chr20:5707011-5707175
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGGCTCCCCACTGCCCCCAGGCG
3' ss Score
8.3
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCATGCCGCTCATCTACTGGTTCTCCCGCCGCATGACGCTGTGGGGTAGCATCTCCTTCAACCTGGCAGTGTTCATCAACATCATCATTGCCTTCTTCTACCCCTACGTGGAAGGCGCGTCCACGG
Seq A exon
GCGTGCTGGGCTCCCCACTCATCTCGCTCCTCTTCTGGATCCTCATCTGCTTCTCCATTGCCGCGCTGTTCACCAAGCACTACAGCGTCCGTCCCCTCATTGTGGCACTGGTCCTTCGCTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCTCTCAAT
Seq C2 exon
CTGACCAACAAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGCGGCACCTTCATCCGTGGCTATAAAGCAATGGTCATGGACATGGAGTTCCTGTATCACGTGGGCTACATCCTGACGAGTGTCCTGGGCCTCTTTGCTCATGAGCTCTTCTACAGTATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'59-69,'59-68,60-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.4=1.7)
C2:
PF0052026=Ion_trans=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCGCTCATCTACTGGTT
R:
TCAGGATGTAGCCCACGTGAT
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]