MmuEX6076226 @ mm9
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27253117-27254275:+
Coord C1 exon
chr17:27253117-27253242
Coord A exon
chr17:27253554-27253726
Coord C2 exon
chr17:27254111-27254275
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCCTGCCGCCCCCAGGCG
3' ss Score
9.82
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCATGCCGCTCATCTACTGGTTCTCCCGCCGCATGACGCTGTGGGGCAGCATCTCCTTCAACCTGGCTGTGTTCATCAATATCATCATTGCCTTCTTCTACCCCTATGTGGAGGGCGCTTCCACAG
Seq A exon
GCGTGCTGGGCTCGCCGCTCATCTCGCTACTCTTCTGGATCCTCATCTGCTTCTCCATCGCTGCACTGTTCACCAAGCGCTACAGCGTCCGTCCCCTCATCGTGGCGCTGATCCTTCGGTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCTCTCAAT
Seq C2 exon
CTGACCAACAAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGTGGCACCTTCATCCGAGGCTATAAGGCCATGGTCATGGACATGGAGTTCCTGTACCATGTGGGCTACATCCTGACAAGCGTCCTGGGCCTCTTTGCCCATGAGCTCTTCTACAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'54-54,'54-53,55-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.4=1.7)
C2:
PF0052026=Ion_trans=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGCTCATCTACTGGTTCT
R:
GCTTGTCAGGATGTAGCCCAC
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: