BtaEX0018611 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7749463-7751170:+
Coord C1 exon
chr23:7749463-7749588
Coord A exon
chr23:7749977-7750149
Coord C2 exon
chr23:7751006-7751170
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCCCGGGCCCCCAGGCG
3' ss Score
7.77
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GCATGCCACTCATCTACTGGTTCTCCCGCCGCATGACTCTCTGGGGCAGCATCTCCTTCAACCTGGCAGTCTTTATCAACATCATCATTGCCTTCTTCTACCCCTACGTGGAGGGCGCGTCCACAG
Seq A exon
GCGTGCTGGGCTCCCCGCTCATCTCACTGCTCTTCTGGATCCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCTACAGCATCCGCCCCCTCATCGTGGCGCTCATCCTGCGTTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCCCTCAAC
Seq C2 exon
CTGACCAACAAGATCGTGTTCGTGGTGAGCTTTGTGGGCAACCGTGGCACCTTCATCCGGGGCTATAAGGCCATGGTCATGGACATGGAGTTCCTGTACCACGTGGGCTACATCCTAACGAGTGTCTTGGGCCTCTTCGCCCACGAGCTCTTCTACAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'58-56,'58-55,59-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(8.9=65.1)
A:
PF0052026=Ion_trans=FE(18.2=100)
C2:
PF0052026=Ion_trans=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTACTGGTTCTCCCGCC
R:
AGAGGCCCAAGACACTCGTTA
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development