HsaEX0032991 @ hg19
Exon Skipping
Gene
ENSG00000183960 | KCNH8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:HGNC Symbol;Acc:18864]
Coordinates
chr3:19189946-19322821:+
Coord C1 exon
chr3:19189946-19190287
Coord A exon
chr3:19295146-19295379
Coord C2 exon
chr3:19322690-19322821
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTGTTTTTCTATAGATA
3' ss Score
10.39
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGGAGAGGGAGCCTGCGCCGGGCTGAGCCTGGAGGTGCGGGGCGGGCTCGGGGAGCGCTCTTGGGGCTCCTCCTGCCACAGCCGGGGCGGCTGGAACTCTCTCCCTTTCTCCCTCCATCCTTCCACTTCCCCTGCTCGGCCCCGCCGTCAGGCCGGGTCCCCCTTCCCTGCCGTCATCAGGTTCCCCTTCTCCCTTCTTGGCACTTTCCTTTCGAACCATCCTTCTGGACAAACTTTGATGGAGAATTTCACACCACGCTGGAAAAATGCCGGTTATGAAAGGATTACTGGCGCCGCAAAACACCTTCCTGGACACCATCGCCACCCGTTTTGACGGAACAC
Seq A exon
ATAGCAACTTCATCCTTGCCAATGCCCAGGTGGCTAAGGGTTTCCCCATAGTCTACTGTTCCGATGGCTTCTGCGAGCTTGCTGGATTTGCCCGAACTGAAGTCATGCAGAAGAGTTGTAGCTGCAAGTTCTTATTTGGGGTTGAAACCAATGAGCAACTGATGCTTCAAATAGAAAAGTCACTGGAGGAGAAAACAGAATTCAAAGGAGAAATTATGTTCTACAAGAAAAACG
Seq C2 exon
GGTCTCCATTTTGGTGCCTACTGGATATTGTTCCCATAAAGAATGAAAAAGGAGATGTAGTACTTTTTCTGGCCTCGTTCAAAGATATAACAGATACAAAAGTGAAGATTACTCCAGAAGATAAAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183960_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=68.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTCCACTTCCCCTGCTC
R:
TTGAACGAGGCCAGAAAAAGT
Band lengths:
308-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)