MmuEX0025052 @ mm10
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52602709-52753704:+
Coord C1 exon
chr17:52602709-52602880
Coord A exon
chr17:52725763-52725996
Coord C2 exon
chr17:52753573-52753704
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCTGTTTTCTACAGATA
3' ss Score
11.24
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATCACGCTCCTGGTGGCTTCTTCCAGCTTGGCACTTTCCTACAGAGCCATCCTTGTGGACAAACTTTGATGGGGAATTTCACACAGCGCTGGAAAAATGCCGGTTATGAAAGGATTACTGGCGCCACAGAACACCTTCCTGGACACTATTGCCACCCGTTTCGACGGAACAC
Seq A exon
ATAGCAACTTCATCCTGGCCAATGCCCAAGTGGCAAAGGGTTTCCCCATAGTCTACTGTTCAGATGGCTTCTGTGAGCTGGCCGGGTTTGCACGAACTGAAGTCATGCAGAAGAGCTGCAGCTGCAAGTTTTTGTTTGGGGTGGAGACCAACGAGCAGCTGATGCTTCAGATAGAAAAGTCCCTGGAGGAGAAAGTAGAATTCAAAGGAGAAATTATGTTCTACAAGAAGAATG
Seq C2 exon
GGGCTCCATTTTGGTGCCTGCTGGATATCGTTCCTATAAAGAATGAGAAAGGAGATGTAGTCCTTTTCCTGGCCTCATTCAAAGACATAACAGACACGAAAGTGAAGATTACATCAGAAGATAAAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGCTCCTGGTGGCTTC
R:
TCTTCTGATGTAATCTTCACTTTCGT
Band lengths:
293-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types