DreEX6072861 @ danRer10
Exon Skipping
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:20910926-20972298:+
Coord C1 exon
chr19:20910926-20911149
Coord A exon
chr19:20956848-20957081
Coord C2 exon
chr19:20972167-20972298
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTGTGTTTGAAACAGACA
3' ss Score
7.21
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TGCCCGCGCGCTCGTGAAGGAACGGGATCCTCCGTGTCTCAGTCCGCTGAAAGCTCAGTTTCACCGGAGTGCATCAAACAGAATCCATACCTTTGTCTCTGACATCGCAGCATCACTTTGATGGGGAATACGATATCAGGGCGGGAAAATGCCTGTTATGAAGGGATTGCTCGCTCCACAGAACACATTTTTGGATACTATAGCGACGCGTTTTGACGGCACAC
Seq A exon
ACAGCAACTTCATTCTGGCCAATGCACAAGTGTCCAAAGGCTTCCCGATTGTGTACTGCTCGGATGGATTCTGTGAACTCACTGGATTTGCCCGAACTGAGGTCATGCAACAGAGCTGCGCATGCAAGTTTCTGTACGGACCGGAGACCAGCGAGCACATAATTCTTCACGTGGACGCGGCACTCGAGGAACGGAGCGAGCTCAAGGAGGAAATAATGTTCTACAAAAAGAGTG
Seq C2 exon
GTAGTGTTTTTTGGTGTCTGCTGGATATTGTGCCTATTAAGAATGAGAAAGGAGATGTCGTGCTGTTCCTCGCCTCTTTTAAAGACGTCACCGACACCAAAGCCAAATCTACACTTGAGGAGAAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640-'0-1,'0-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTCCGTGTCTCAGTCC
R:
ATTTGGCTTTGGTGTCGGTGA
Band lengths:
308-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]