RnoEX0046055 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3461635-3697736:-
Coord C1 exon
chr9:3697613-3697736
Coord A exon
chr9:3509821-3510054
Coord C2 exon
chr9:3461635-3461766
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTTTTATCTGTTTTCTCCAGATA
3' ss Score
10.8
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATCCTTGTGGACAAACTTTGATGGGGAATTTCACACAGCGCTGGAAAAATGCCGGTTATGAAAGGATTGCTGGCGCCACAGAACACCTTCCTGGACACTATTGCCACCCGTTTCGACGGAACAC
Seq A exon
ATAGCAACTTCATCCTGGCCAATGCCCAAGTGGCAAAAGGTTTCCCCATAGTCTACTGTTCAGATGGCTTCTGTGAGCTGGCTGGGTTTGCTCGAACTGAAGTCATGCAGAAGAGTTGCAGCTGCAAGTTTCTGTTTGGGGTGGAGACCAACGAGCAGCTGATGCTTCAGATCGAAAAGTCCCTGGAGGAGAAGGTAGAGTTCAAAGGAGAAATTATGTTCTACAAGAAGAATG
Seq C2 exon
GGGCTCCATTTTGGTGCCTGTTGGATATCGTTCCTATAAAGAATGAGAAAGGAGATGTGGTCCTTTTCCTGGCCTCATTCAAAGATATAACAGACACGAAAGTGAAGATTACTTCAGAAGATAAAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTGGACAAACTTTGATGGG
R:
AAGTAATCTTCACTTTCGTGTCTGT
Band lengths:
236-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]