HsaEX0033119 @ hg19
Exon Skipping
Gene
ENSG00000107147 | KCNT1
Description
potassium channel, subfamily T, member 1 [Source:HGNC Symbol;Acc:18865]
Coordinates
chr9:138642788-138645839:+
Coord C1 exon
chr9:138642788-138642887
Coord A exon
chr9:138644225-138644303
Coord C2 exon
chr9:138645783-138645839
Length
79 bp
Sequences
Splice sites
3' ss Seq
AACCTCCTGTCTTTGTCTAGGTC
3' ss Score
10.27
5' ss Seq
TAGGTCACT
5' ss Score
-0.15
Exon sequences
Seq C1 exon
GCCTGAGGATCCGGCTGTTCAACTTCTCCCTGAAGCTGCTCACCTGCCTGCTCTACATTGTGCGCGTCCTGCTCGATGACCCGGCCCTGGGCATCGGATG
Seq A exon
GTCAGAAGAGGGCAGAACCCACTAGGAGAGTTTGAGAAGGAGAACTGGGCCCTGACTGACTCTCAAGCTACTTTCCTAG
Seq C2 exon
CTGGGGCTGCCCAAAGCAGAACTACTCCTTCAATGACTCGTCCTCCGAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147-'5-11,'5-9,7-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.421 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGATCCGGCTGTTCAAC
R:
CAGTTGATCTCGGAGGACG
Band lengths:
155-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)