HsaEX0033118 @ hg19
Exon Skipping
Gene
ENSG00000107147 | KCNT1
Description
potassium channel, subfamily T, member 1 [Source:HGNC Symbol;Acc:18865]
Coordinates
chr9:138641944-138645839:+
Coord C1 exon
chr9:138641944-138642023
Coord A exon
chr9:138642788-138642887
Coord C2 exon
chr9:138645783-138645839
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGCCGCTGCCCTCCCCGCAGGCC
3' ss Score
10.61
5' ss Seq
ATGGTGGGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGTCCAGGTGGAGTTCTACGTCAACGAGAACACCTTCAAGGAGCGGCTCAAGCTGTTCTTCATCAAAAACCAAAGATCGA
Seq A exon
GCCTGAGGATCCGGCTGTTCAACTTCTCCCTGAAGCTGCTCACCTGCCTGCTCTACATTGTGCGCGTCCTGCTCGATGACCCGGCCCTGGGCATCGGATG
Seq C2 exon
CTGGGGCTGCCCAAAGCAGAACTACTCCTTCAATGACTCGTCCTCCGAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147-'4-11,'4-8,5-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGGTGGAGTTCTACGT
R:
CAGTTGATCTCGGAGGACG
Band lengths:
137-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)