HsaEX0033118 @ hg38
Exon Skipping
Gene
ENSG00000107147 | KCNT1
Description
potassium sodium-activated channel subfamily T member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr9:135750098-135753993:+
Coord C1 exon
chr9:135750098-135750177
Coord A exon
chr9:135750942-135751041
Coord C2 exon
chr9:135753937-135753993
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGCCGCTGCCCTCCCCGCAGGCC
3' ss Score
10.61
5' ss Seq
ATGGTGGGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GGTCCAGGTGGAGTTCTACGTCAACGAGAACACCTTCAAGGAGCGGCTCAAGCTGTTCTTCATCAAAAACCAAAGATCGA
Seq A exon
GCCTGAGGATCCGGCTGTTCAACTTCTCCCTGAAGCTGCTCACCTGCCTGCTCTACATTGTGCGCGTCCTGCTCGATGACCCGGCCCTGGGCATCGGATG
Seq C2 exon
CTGGGGCTGCCCAAAGCAGAACTACTCCTTCAATGACTCGTCCTCCGAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147_MULTIEX2-2/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.002 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGGTGGAGTTCTACGT
R:
CAGTTGATCTCGGAGGACG
Band lengths:
137-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development