GgaEX6015480 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8921309-8922575:-
Coord C1 exon
chr17:8922496-8922575
Coord A exon
chr17:8921811-8921910
Coord C2 exon
chr17:8921309-8921365
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGCGCCGCCTCCGCCGCAGGTC
3' ss Score
8.37
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGTGCAGGTGGAGTTCTACGTCAATGAGAACACCTTCAAGGAGCGCCTGAAGCTCTTCTTCATCAAAAACCAGAGATCGA
Seq A exon
GTCTGAGGATCCGACTGTTCAACTTCTCCCTGAAGCTGCTCACCTGCCTGCTGTACATCGTGCGTGTGCTGCTCGACAACCCAGAGGAGGGCATAGGATG
Seq C2 exon
CTGGGAATGCGAGAAGCAGAACTACACGCTCTTCAATCAGTCCACAAAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGGTGGAGTTCTACGT
R:
TCTTTGTGGACTGATTGAAGAGCG
Band lengths:
130-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]