RnoEX0046231 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3310954-3338939:+
Coord C1 exon
chr3:3310954-3311205
Coord A exon
chr3:3336737-3336836
Coord C2 exon
chr3:3338883-3338939
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGATGTCCCCCTCCTAACAGGCC
3' ss Score
10.79
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CGCGGGGGGTCGCGGACGCCGGGAAGAGGCTCGCAGGGGTCTGCGCGCGTCCGGCGAGGGCGAGGACGGTGAGGGGACGCTGCCGTGTGCCTGCAGGCGACCCTGCGCAGGGAAAGTCGGCGGCGGGGACGTGCTCCTGGACGCTGCCAGCCACACAATGAACGACCTGGACACAGAGGTACTGCCCTTGCCGCCACGGTATAGATTCCGTGACCTGCTTTTAGGAGACCAGACATTCCCGAACGACGACAG
Seq A exon
GCCTGAGGATCCGGCTGTTCAACTTCTCCCTCAAGCTCCTCACCTGCCTGCTGTACATTGTCCGTGTCCTGCTCGACAACCCAGACCAGGGCATCGGATG
Seq C2 exon
CTGGGGCTGCACGAAGTATAACTACACGTTCAATGGTTCGTCCTCGGAGTTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGACGGTGAGGGGAC
R:
ACTCCGAGGACGAACCATTGA
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]