GgaEX6015480 @ galGal4
Exon Skipping
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8225981-8227247:-
Coord C1 exon
chr17:8227168-8227247
Coord A exon
chr17:8226483-8226582
Coord C2 exon
chr17:8225981-8226037
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGCGCCGCCTCCGCCGCAGGTC
3' ss Score
8.37
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGTGCAGGTGGAGTTCTACGTCAATGAGAACACCTTCAAGGAGCGCCTGAAGCTCTTCTTCATCAAAAACCAGAGATCGA
Seq A exon
GTCTGAGGATCCGACTGTTCAACTTCTCCCTGAAGCTGCTCACCTGCCTGCTGTACATCGTGCGTGTGCTGCTCGACAACCCAGAGGAGGGCATAGGATG
Seq C2 exon
CTGGGAATGCGAGAAGCAGAACTACACGCTCTTCAATCAGTCCACAAAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGGTGGAGTTCTACGT
R:
TCTTTGTGGACTGATTGAAGAGCG
Band lengths:
130-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]