BtaEX6047100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103398979-103405116:+
Coord C1 exon
chr11:103398979-103399058
Coord A exon
chr11:103399618-103399717
Coord C2 exon
chr11:103405060-103405116
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCACCCACCCCCACCCACAGGCC
3' ss Score
8.51
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GGTCCAGGTGGAGTTCTACGTCAACGAGAACACCTTCAAGGAGAGGCTTAAGCTGTTCTTCATCAAAAACCAAAGATCCA
Seq A exon
GCCTGCGGATCCGGCTGTTCAACTTCTCCCTGAAGCTGCTGACCTGCCTGCTGTACATTGTCCGCGTCCTGCTGGACGACCCAGCCCTGGGGATCGGATG
Seq C2 exon
CTGGGGCTGCCCGAAGCAGAATTACACCTTCAATGAGTCGTCCTCCGAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'8-5,'8-2,10-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGGTGGAGTTCTACGT
R:
CAGTTGATCTCGGAGGACG
Band lengths:
137-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]