MmuEX0025163 @ mm10
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25863734-25898435:+
Coord C1 exon
chr2:25863734-25864062
Coord A exon
chr2:25888759-25888858
Coord C2 exon
chr2:25898271-25898435
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTCCCCTCCTAACAGGCC
3' ss Score
11.48
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CCCGGAGGACCCGGGAGGCGCCCCGCCCCCGCCGAGCTCCGCCCTCAGCCCCTCCCCCTGCAGGTGCTTGTCCCGCCCCCGCGGGGGGTCGCGGAGGCCGGGAAGGGCTCGCAGGGGTCTGCGCGCGACCGGCGAGGGCGCGGGCGGTGAGGGGGCGCTGCCTTGTGCCTGCAGGCGACCCTGCTCAGGGAAAGTCGGCCGCGGGGACGTGCTCCTGGACACCGCCGCCTCACAATGAACGACCTGGACACGGAGGTGCTGCCCTTGCCGCCAAGGTACCGATTCCGTGACCTGCTTTTAGGAGACCAGCCATTCCCGAACGACGATAG
Seq A exon
GCCTGAGGATCCGGCTGTTCAACTTCTCCCTCAAGCTCCTCACCTGCCTGCTGTATATCGTCCGTGTCCTGCTTGACAACCCAGACCAGGGCATCGGATG
Seq C2 exon
TTTGAAGAGCTTGTCTACCTCTGGATGGAGCGTCAGAAGTCAGGGGGCAACTATAGCCGCCACCGAGCACGGACGGAGAAGCACGTAGTCCTGTGTGTGAGCTCCCTCAAGATTGATCTCCTCATGGACTTCCTGAATGAGTTCTATGCCCATCCCCGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740_MULTIEX1-3/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PD(9.9=14.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGAACGACCTGGACACG
R:
CGGGGATGGGCATAGAACTCA
Band lengths:
256-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types