DmeEX6009752 @ dm6

Exon Skipping

Gene

Description

The gene slowpoke 2 is referred to in FlyBase by the symbol DmelSLO2 (CG42732, FBgn0261698). It is a protein_coding_gene from Dmel. It has 10 annotated transcripts and 10 polypeptides (9 unique). Gene sequence location is 2R:10322195..10416996. Its molecular function is described by: calcium-activated potassium channel activity; outward rectifier potassium channel activity; intracellular sodium activated potassium channel activity. It is involved in the biological process described with: potassium ion transmembrane transport; potassium ion transport. 21 alleles are reported. The phenotypes of these alleles manifest in: mesothoracic tergum; ganglion mother cell; trichogen cell. The phenotypic classes of alleles include: phenotype; increased mortality; increased mortality during development; some die during P-stage.

Coordinates

chr2R:10339303-10340202:-

Coord C1 exon

chr2R:10340123-10340202

Coord A exon

chr2R:10339566-10339665

Coord C2 exon

chr2R:10339303-10339501

Length

100 bp

Sequences

Splice sites

3' ss Seq

CCACTTTCCTAAAAAATAAGGCC

3' ss Score

0.71

5' ss Seq

ATGGTAAGT

5' ss Score

11.01

Exon sequences

Seq C1 exon

AGTTCGGGTGGAGTACTATGTGAACGAAAACACATTCAAAGAAAGACTGCAACTCTATTTCATTAAGAATCAGCGTTCAA

Seq A exon

GCCTGCGCATACGAATCGCCGACTTATTCCTTAAGTTACTGTCGTGTGTTCTCTACATAATACGTGTGATATTGGATAAAAATCCAACATTTATAACATG

Seq C2 exon

CTATGGCTGCGAAGTGGGCAATAAGACGGAGTTCATCATCTCGGCCAAACTGACGGAGGAGGAGTTCCAGGAGAATCCAATCATTAACTGGGACGCAATACTCTGGGTGAATCGGCCAACAGTGCTCTGGGTCCTGCAGCTGCTTCTAGCCATGGTGTCGCTAACGCAATCCTTGGTTCTCACATATCTAGGCTATAAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0261698-'12-18,'12-17,13-18=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features