GgaEX1031358 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2734353-2744250:+
Coord C1 exon
chr8:2734353-2734432
Coord A exon
chr8:2739629-2739728
Coord C2 exon
chr8:2744194-2744250
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCCTTTTAACATAGGTC
3' ss Score
8.21
5' ss Seq
ATGGTAGTA
5' ss Score
0.55
Exon sequences
Seq C1 exon
GGTGCAAGTTGAATTCTATATGAATGAAAACACATTTAAAGAGAGACTAAAACTCTTCTTCATCAAAAACCAAAGATCAA
Seq A exon
GTCTGAGAATACGGTTATTCAATTTTTCGCTTAAGCTACTAAGCTGTTTCTTATACATAATTCGTGTGCTCCTGGATGATCCTACACAAGGACATGGATG
Seq C2 exon
TAAGGAATTAAACCGGGATTGTTACAATCAAAATTACACACCCGGAACAATTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'1-6,'1-3,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAAGTTGAATTCTATATGAATG
R:
CAATCAATTGTTCCGGGTGTGT
Band lengths:
137-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]