MmuEX6027929 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140351208-140362997:+
Coord C1 exon
chr1:140351208-140351287
Coord A exon
chr1:140354454-140354553
Coord C2 exon
chr1:140362949-140362997
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTGTTTGCTTAAAGGTC
3' ss Score
8.71
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTCCAAGTTGAATTCTACATGAACGAAAACACATTTAAAGAGAGATTAAAACTGTTTTTCATAAAAAACCAGCGATCAA
Seq A exon
GTCTAAGAATCCGCTTGTTCAACTTTTCCCTGAAGTTGTTAAGCTGCTTATTATATATTATCCGTGTGTTGCTTGAGAAACCGTCACAGGGAAGTGAATG
Seq C2 exon
GTCTCACATATTTTGGGTTAACCGAAGTCTACCTTTATGGGGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'1-4,'1-3,6-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAAGTTGAATTCTACATGAACG
R:
ACCCCATAAAGGTAGACTTCGGT
Band lengths:
123-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types